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Biological Magnetic Resonance Data Bank


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BMRB Entry 6809

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6809
MolProbity Validation Chart

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Title: Backbone 1H,13C, and 15N chemical shift assignments for rabbitpox encoded viral chemokine inhibitor (vCCI)   PubMed: 16534540

Deposition date: 2005-09-06 Original release date: 2006-04-27

Authors: DeRider, Michele; Zhang, Li; LiWang, Patricia

Citation: DeRider, Michele; Zhang, Li; LiWang, Patricia. "Resonance Assignments and Secondary Structure of vCCI, a 26 kDa CC Chemokine Inhibitor from Rabbitpox Virus"  J. Biomol. NMR 36, 22-22 (2006).

Assembly members:
vCCI, polymer, 242 residues, Formula weight is not available

Natural source:   Common Name: rabbitpox virus   Taxonomy ID: 32606   Superkingdom: Viruses   Kingdom: Not applicable   Genus/species: Orthopoxvirus rabbitpox

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
vCCI: MPASLQQSSSSSSSCTEEEN KHHMGIDVIIKVTKQDQTPT NDKICQSVTEITESESDPDP EVESEDDSTSVEDVDPPTTY YSIIGGGLRMNFGFTKCPQI KSISESADGNTVNARLSSVS PGQGKDSPAITHEEALAMIK DCEVSIDIRCSEEEKDSDIK THPVLGSNISHKKVSYEDII GSTIVDTKCVKNLEFSVRIG DMCKESSELEVKDGFKYVDG SASKGATDDTSLIDSTKLKA CV

Data sets:
Data typeCount
13C chemical shifts583
15N chemical shifts195
1H chemical shifts195

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1viral chemokine inhibitor1

Entities:

Entity 1, viral chemokine inhibitor 242 residues - Formula weight is not available

1   METPROALASERLEUGLNGLNSERSERSER
2   SERSERSERSERCYSTHRGLUGLUGLUASN
3   LYSHISHISMETGLYILEASPVALILEILE
4   LYSVALTHRLYSGLNASPGLNTHRPROTHR
5   ASNASPLYSILECYSGLNSERVALTHRGLU
6   ILETHRGLUSERGLUSERASPPROASPPRO
7   GLUVALGLUSERGLUASPASPSERTHRSER
8   VALGLUASPVALASPPROPROTHRTHRTYR
9   TYRSERILEILEGLYGLYGLYLEUARGMET
10   ASNPHEGLYPHETHRLYSCYSPROGLNILE
11   LYSSERILESERGLUSERALAASPGLYASN
12   THRVALASNALAARGLEUSERSERVALSER
13   PROGLYGLNGLYLYSASPSERPROALAILE
14   THRHISGLUGLUALALEUALAMETILELYS
15   ASPCYSGLUVALSERILEASPILEARGCYS
16   SERGLUGLUGLULYSASPSERASPILELYS
17   THRHISPROVALLEUGLYSERASNILESER
18   HISLYSLYSVALSERTYRGLUASPILEILE
19   GLYSERTHRILEVALASPTHRLYSCYSVAL
20   LYSASNLEUGLUPHESERVALARGILEGLY
21   ASPMETCYSLYSGLUSERSERGLULEUGLU
22   VALLYSASPGLYPHELYSTYRVALASPGLY
23   SERALASERLYSGLYALATHRASPASPTHR
24   SERLEUILEASPSERTHRLYSLEULYSALA
25   CYSVAL

Samples:

sample_1: vCCI, [U-2H; U-15N; U-13C], 2 mM; NaCl 100 ± 10 mM; Phosphate Buffer 20 mM

conditions_1: ionic strength: 120 mM; pH: 7.0; temperature: 310 K

Experiments:

NameSampleSample stateSample conditions
1H15N_HSQCsample_1not availableconditions_1
HNCAsample_1not availableconditions_1
HN(CO)CAsample_1not availableconditions_1
HNCACBsample_1not availableconditions_1
HN(COCA)CBsample_1not availableconditions_1
15N_HSQC-NOESYsample_1not availableconditions_1

Software:

NMRPipe, NIH - processing

NMR spectrometers:

  • Varian Inova 600 MHz

Related Database Links:

BMRB 7024
PDB
DBJ BAA00487
EMBL CAA64086 CAD90757 CAM58165 CAM58393
GB AAA47970 AAA48229 AAB53969 AAF33853 AAF34094
REF YP_232883 YP_233100
SP P19063 P21090 Q805H7

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts