BMRB Entry 18684
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18684
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Title: Identification of the Structural Traits Mediating the Antimicrobial Activity of a Chimeric Peptide of HBD2 and HBD3 PubMed: 22995312
Deposition date: 2012-08-30 Original release date: 2013-08-12
Authors: Spudy, Bjorn; Soennichsen, Frank; Waetzig, Georg; Groetzinger, Joachim; Jung, Sascha
Citation: Spudy, Bjorn; Soennichsen, Frank; Waetzig, Georg; Groetzinger, Joachim; Jung, Sascha. "Identification of structural traits that increase the antimicrobial activity of a chimeric peptide of human beta-defensins 2 and 3" Biochem. Biophys. Res. Commun. 427, 207-211 (2012).
Assembly members:
entity, polymer, 44 residues, 4982.087 Da.
Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
entity: GIINTLQKYYCRVRGAICHP
VFCPRRYKQIGTCGLPGTKC
CKKP
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 144 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Chimeric Peptide of HBD2 and HBD3 | 1 |
Entities:
Entity 1, Chimeric Peptide of HBD2 and HBD3 44 residues - 4982.087 Da.
| 1 | GLY | ILE | ILE | ASN | THR | LEU | GLN | LYS | TYR | TYR | ||||
| 2 | CYS | ARG | VAL | ARG | GLY | ALA | ILE | CYS | HIS | PRO | ||||
| 3 | VAL | PHE | CYS | PRO | ARG | ARG | TYR | LYS | GLN | ILE | ||||
| 4 | GLY | THR | CYS | GLY | LEU | PRO | GLY | THR | LYS | CYS | ||||
| 5 | CYS | LYS | LYS | PRO |
Samples:
sample_1: HBD2_HBD3 0.15 mM; H2O 93%; D2O 7%
sample_conditions_1: ionic strength: 0.02 M; pH: 4.6; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H NOESY | sample_1 | isotropic | sample_conditions_1 |
| 2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions_1 |
Software:
NMRView, Johnson, One Moon Scientific - processing
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
CYANA, Guntert, Mumenthaler and Wuthrich - refinement
NMR spectrometers:
- Bruker Avance 600 MHz
Related Database Links:
| PDB |