BMRB Entry 18279

Name: human CEB25 minisatellite G-quadruplex
Published: 2012-03-22

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PDB ID: 2lpw
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR18279
MolProbity Validation Chart

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title: human CEB25 minisatellite G-quadruplex PubMed: 22376028

Deposition date: 2012-02-20 Original release date: 2012-03-22

Authors: Amrane, Samir; Adrian, Michael; Heddi, Brahim; Serero, Alexandre; Nicolas, Alain; Mergny, Jean-Louis; Phan, Anh Tuan

Citation: Amrane, Samir; Adrian, Michael; Heddi, Brahim; Serero, Alexandre; Nicolas, Alain; Mergny, Jean-Louis; Phan, Anh Tuan. "Formation of pearl-necklace monomorphic G-quadruplexes in the human CEB25 minisatellite." J. Am. Chem. Soc. 134, 5807-5816 (2012).

Assembly members:
DNA_(26-MER), polymer, 26 residues, 8275.375 Da.

Natural source: Common Name: Humans Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):
DNA_(26-MER): AAGGGTGGGTGTAAGTGTGG GTGGGT

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	56
1H chemical shifts	233
31P chemical shifts	25

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	DNA (26-MER)	1

Entities:

Entity 1, DNA (26-MER) 26 residues - 8275.375 Da.

1

DA

DG

DT

DG

DT

2

DG

DT

DA

DG

DT

DG

DT

DG

3

DG

DT

DG

DT

Samples:

sample_1: DNA (26-MER)0.2 – 2 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 90 mM; pH: 7.00; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-1H COSY	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	anisotropic	sample_conditions_1
2D 1H-31P-HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C-HMBC	sample_1	isotropic	sample_conditions_1

Software:

X-PLOR NIH v2.30, Accelrys Software Inc., Goddard, Schwieters, Kuszewski, Tjandra and Clore - data analysis, data analysis, structure solution

NMR spectrometers:

Bruker AMX 400 MHz
Bruker AMX 600 MHz
Bruker AMX 700 MHz
Bruker AMX 800 MHz