BMRB Entry 11209
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11209
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Title: Solution structure of the SH3 domain of Endophilin B1 (Sh3g1b1)
Deposition date: 2010-07-22 Original release date: 2011-07-21
Authors: Qin, X.; Hayashi, F.; Yokoyama, S.
Citation: Qin, X.; Hayashi, F.; Yokoyama, S.. "Solution structure of the SH3 domain of Endophilin B1 (Sh3g1b1)" . ., .-..
Assembly members:
SH3 domain, polymer, 81 residues, Formula weight is not available
Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus
Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free
Entity Sequences (FASTA):
SH3 domain: GSSGSSGLNDLKESSNNRKA
RVLYDYDAANSTELSLLADE
VITVFSVVGMDSDWLMGERG
NQKGKVPITYLELLNSGPSS
G
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 326 |
| 15N chemical shifts | 74 |
| 1H chemical shifts | 518 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | SH3 domain GRB2-like protein B1 | 1 |
Entities:
Entity 1, SH3 domain GRB2-like protein B1 81 residues - Formula weight is not available
| 1 | GLY | SER | SER | GLY | SER | SER | GLY | LEU | ASN | ASP | ||||
| 2 | LEU | LYS | GLU | SER | SER | ASN | ASN | ARG | LYS | ALA | ||||
| 3 | ARG | VAL | LEU | TYR | ASP | TYR | ASP | ALA | ALA | ASN | ||||
| 4 | SER | THR | GLU | LEU | SER | LEU | LEU | ALA | ASP | GLU | ||||
| 5 | VAL | ILE | THR | VAL | PHE | SER | VAL | VAL | GLY | MET | ||||
| 6 | ASP | SER | ASP | TRP | LEU | MET | GLY | GLU | ARG | GLY | ||||
| 7 | ASN | GLN | LYS | GLY | LYS | VAL | PRO | ILE | THR | TYR | ||||
| 8 | LEU | GLU | LEU | LEU | ASN | SER | GLY | PRO | SER | SER | ||||
| 9 | GLY |
Samples:
sample_1: SH3 domain, [U-13C; U-15N], 1.52 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%
condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D 15N-separated NOESY | sample_1 | isotropic | condition_1 |
| 3D 13C-separated NOESY | sample_1 | isotropic | condition_1 |
Software:
VNMR v6.1C, Varian - collection
NMRPipe v20031121, DelaglioF. - processing
NMRView v5.0.4, JohnsonB.A. - data analysis
Kujira v0.9296, KobayashiN. - data analysis
CYANA v2.0.17, GuntertP. - refinement, structure solution
NMR spectrometers:
- Varian INOVA 800 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts