BMRB Entry 11111
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11111
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Title: The solution structure of the sixth fibronectin type III domain of human Neogenin
Deposition date: 2010-02-18 Original release date: 2011-02-18
Authors: Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.
Citation: Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "The solution structure of the sixth fibronectin type III domain of human Neogenin" . ., .-..
Assembly members:
fn3 domain, polymer, 124 residues, Formula weight is not available
Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free
Entity Sequences (FASTA):
fn3 domain: GSSGSSGTAHGTTFELVPTS
PPKDVTVVSKEGKPKTIIVN
WQPPSEANGKITGYIIYYST
DVNAEIHDWVIEPVVGNRLT
HQIQELTLDTPYYFKIQARN
SKGMGPMSEAVQFRTPKASG
PSSG
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 514 |
| 15N chemical shifts | 112 |
| 1H chemical shifts | 798 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | fn3 domain | 1 |
Entities:
Entity 1, fn3 domain 124 residues - Formula weight is not available
| 1 | GLY | SER | SER | GLY | SER | SER | GLY | THR | ALA | HIS | ||||
| 2 | GLY | THR | THR | PHE | GLU | LEU | VAL | PRO | THR | SER | ||||
| 3 | PRO | PRO | LYS | ASP | VAL | THR | VAL | VAL | SER | LYS | ||||
| 4 | GLU | GLY | LYS | PRO | LYS | THR | ILE | ILE | VAL | ASN | ||||
| 5 | TRP | GLN | PRO | PRO | SER | GLU | ALA | ASN | GLY | LYS | ||||
| 6 | ILE | THR | GLY | TYR | ILE | ILE | TYR | TYR | SER | THR | ||||
| 7 | ASP | VAL | ASN | ALA | GLU | ILE | HIS | ASP | TRP | VAL | ||||
| 8 | ILE | GLU | PRO | VAL | VAL | GLY | ASN | ARG | LEU | THR | ||||
| 9 | HIS | GLN | ILE | GLN | GLU | LEU | THR | LEU | ASP | THR | ||||
| 10 | PRO | TYR | TYR | PHE | LYS | ILE | GLN | ALA | ARG | ASN | ||||
| 11 | SER | LYS | GLY | MET | GLY | PRO | MET | SER | GLU | ALA | ||||
| 12 | VAL | GLN | PHE | ARG | THR | PRO | LYS | ALA | SER | GLY | ||||
| 13 | PRO | SER | SER | GLY |
Samples:
sample_1: FN3 domain, [U-13C; U-15N], 1.3 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%
condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D 15N-SEPARATED NOESY | sample_1 | isotropic | condition_1 |
| 3D 13C-SEPARATED NOESY | sample_1 | isotropic | condition_1 |
Software:
xwinnmr v2.6, Bruker - collection
NMRPipe v20031121, Delaglio, F. - processing
NMRView v5.0.4, Johnson, B.A. - data analysis
Kujira v0.9295, Kobayashi, N. - data analysis
CYANA v2.0.17, Guntert, P. - structure solution
NMR spectrometers:
- Bruker AVANCE 800 MHz
Download simulated HSQC data in one of the following formats:
CSV: Backbone
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SPARKY: Backbone
or all simulated shifts